2019

  • Schmitt M, Sinnberg T, Nalpas NC, Maass A, Schittek B & Macek B (2019) Quantitative Proteomics Links the Intermediate Filament Nestin to Resistance to Targeted BRAF Inhibition in Melanoma Cells. Mol Cell Proteomics 18, 1096-1109. PubMed
  • Tacconelli E, Gorska A, De Angelis G, Lammens C, Restuccia G, Schrenzel J, Huson DH, Carevic B, Preotescu L, Carmeli Y, et al. (2019) Estimating the association between antibiotic exposure and colonisation with ESBL-producing Gram negative bacteria: a multicentre, prospective cohort study. Clin Microbiol Infect. PubMed
  • Prabh N & Rodelsperger C (2019) De Novo, Divergence, and Mixed Origin Contribute to the Emergence of Orphan Genes in Pristionchus Nematodes. G3 (Bethesda). PubMed
  • Baier M, Rustmeier NH, Harr J, Cyrus N, Reiss GJ, Grafmuller A, Blaum BS, Stehle T & Hartmann L (2019) Divalent Sialylated Precision Glycooligomers Binding to Polyomaviruses and the Effect of Different Linkers. Macromol Biosci 19, e1800426. PubMed
  • Arumugam K, Bagci C, Bessarab I, Beier S, Buchfink B, Gorska A, Qiu G, Huson DH & Williams RBH (2019) Annotated bacterial chromosomes from frame-shift-corrected long-read metagenomic data. Microbiome 7, 61. PubMed
  • Poole AC, Goodrich JK, Youngblut ND, Luque GG, Ruaud A, Sutter JL, Waters JL, Shi Q, El-Hadidi M, Johnson LM, et al. (2019) Human Salivary Amylase Gene Copy Number Impacts Oral and Gut Microbiomes. Cell Host Microbe 25, 553-564 e7. PubMed
  • Takacs Z, Sporbeck K, Stoeckle J, Prado Carvajal MJ, Grimmel M & Proikas-Cezanne T (2019) ATG-18 and EPG-6 are Both Required for Autophagy but Differentially Contribute to Lifespan Control in Caenorhabditis elegans. Cells 8. PubMed
  • Eisenberg-Bord M, Tsui HS, Antunes D, Fernandez-Del-Rio L, Bradley MC, Dunn CD, Nguyen TPT, Rapaport D, Clarke CF & Schuldiner M (2019) The Endoplasmic Reticulum-Mitochondria Encounter Structure Complex Coordinates Coenzyme Q Biosynthesis. Contact (Thousand Oaks) 2, 2515256418825409. PubMed
  • Keskeny C, Raisch T, Sgromo A, Igreja C, Bhandari D, Weichenrieder O & Izaurralde E (2019) A conserved CAF40-binding motif in metazoan NOT4 mediates association with the CCR4-NOT complex. Genes Dev 33, 236-252. PubMed
  • Yokoyama H, Moreno-Andres D, Astrinidis SA, Hao Y, Weberruss M, Schellhaus AK, Lue H, Haramoto Y, Gruss OJ & Antonin W (2019) Chromosome alignment maintenance requires the MAP RECQL4, mutated in the Rothmund-Thomson syndrome. Life Sci Alliance 2. PubMed
  • Antunes D, Chowdhury A, Aich A, Saladi S, Harpaz N, Stahl M, Schuldiner M, Herrmann JM, Rehling P & Rapaport D (2019) Overexpression of branched-chain amino acid aminotransferases rescues the growth defects of cells lacking the Barth syndrome-related gene TAZ1. J Mol Med (Berl) 97, 269-279. PubMed
  • Morsdorf D & Muller P (2019) Tuning Protein Diffusivity with Membrane Tethers. Biochemistry 58, 177-181. PubMed
  • Hermsdorf GL, Szilagyi SA, Rosch S & Schaffer E (2019) High performance passive vibration isolation system for optical tables using six-degree-of-freedom viscous damping combined with steel springs. Rev Sci Instrum 90, 015113. PubMed
  • Mueller AJ & Proikas-Cezanne T (2019) Automated Detection of Autophagy Response Using Single Cell-Based Microscopy Assays. Methods Mol Biol 1880, 429-445. PubMed

 

 

2018

  • Noldeke ER, Muckenfuss LM, Niemann V, Muller A, Stork E, Zocher G, Schneider T & Stehle T (2018) Author Correction: Structural basis of cell wall peptidoglycan amidation by the GatD/MurT complex of Staphylococcus aureus. Sci Rep 8, 18073. PubMed
  • Sutherland DM, Aravamudhan P, Dietrich MH, Stehle T & Dermody TS (2018) Reovirus Neurotropism and Virulence Are Dictated by Sequences in the Head Domain of the Viral Attachment Protein. J Virol 92. PubMed
  • Raisch T, Sandmeir F, Weichenrieder O, Valkov E & Izaurralde E (2018) Structural and biochemical analysis of a NOT1 MIF4G-like domain of the CCR4-NOT complex. J Struct Biol 204, 388-395. PubMed
  • Werner MS, Sieriebriennikov B, Prabh N, Loschko T, Lanz C & Sommer RJ (2018) Young genes have distinct gene structure, epigenetic profiles, and transcriptional regulation. Genome Res 28, 1675-1687. PubMed
  • Prabh N, Roeseler W, Witte H, Eberhardt G, Sommer RJ & Rodelsperger C (2018) Deep taxon sampling reveals the evolutionary dynamics of novel gene families in Pristionchus nematodes. Genome Res 28, 1664-1674. PubMed
  • Moreno E, Lenuzzi M, Rodelsperger C, Prabh N, Witte H, Roeseler W, Riebesell M & Sommer RJ (2018) DAF-19/RFX controls ciliogenesis and influences oxygen-induced social behaviors in Pristionchus pacificus. Evol Dev 20, 233-243. PubMed
  • Rodelsperger C, Roseler W, Prabh N, Yoshida K, Weiler C, Herrmann M & Sommer RJ (2018) Phylotranscriptomics of Pristionchus Nematodes Reveals Parallel Gene Loss in Six Hermaphroditic Lineages. Curr Biol 28, 3123-3127 e5. PubMed
  • Almuedo-Castillo M, Blassle A, Morsdorf D, Marcon L, Soh GH, Rogers KW, Schier AF & Muller P (2018) Scale-invariant patterning by size-dependent inhibition of Nodal signalling. Nat Cell Biol 20, 1032-1042. PubMed
  • Noldeke ER, Muckenfuss LM, Niemann V, Muller A, Stork E, Zocher G, Schneider T & Stehle T (2018) Structural basis of cell wall peptidoglycan amidation by the GatD/MurT complex of Staphylococcus aureus. Sci Rep 8, 12953. PubMed
  • Gruner S, Weber R, Peter D, Chung MY, Igreja C, Valkov E & Izaurralde E (2018) Structural motifs in eIF4G and 4E-BPs modulate their binding to eIF4E to regulate translation initiation in yeast. Nucleic Acids Res 46, 6893-6908. PubMed
  • Chugh M, Reissner M, Bugiel M, Lipka E, Herrmann A, Roy B, Muller S & Schaffer E (2018) Phragmoplast Orienting Kinesin 2 Is a Weak Motor Switching between Processive and Diffusive Modes. Biophys J 115, 375-385. PubMed
  • Dietrich MH, Ogden KM, Long JM, Ebenhoch R, Thor A, Dermody TS & Stehle T (2018) Structural and Functional Features of the Reovirus sigma1 Tail. J Virol 92. PubMed
  • Cheng MHK, Hoffmann PC, Franz-Wachtel M, Sparn C, Seng C, Macek B & Jansen RP (2018) The RNA-Binding Protein Scp160p Facilitates Aggregation of Many Endogenous Q/N-Rich Proteins. Cell Rep 24, 20-26. PubMed
  • Namdeo S, Moreno E, Rodelsperger C, Baskaran P, Witte H & Sommer RJ (2018) Two independent sulfation processes regulate mouth-form plasticity in the nematode Pristionchus pacificus. Development 145. PubMed
  • Sieriebriennikov B, Prabh N, Dardiry M, Witte H, Roseler W, Kieninger MR, Rodelsperger C & Sommer RJ (2018) A Developmental Switch Generating Phenotypic Plasticity Is Part of a Conserved Multi-gene Locus. Cell Rep 23, 2835-2843 e4. PubMed
  • Zuleger T, Heinzelbecker J, Takacs Z, Hunter C, Voelkl J, Lang F & Proikas-Cezanne T (2018) SGK1 Inhibits Autophagy in Murine Muscle Tissue. Oxid Med Cell Longev 2018, 4043726. PubMed
  • Gorska A, Peter S, Willmann M, Autenrieth I, Schlaberg R & Huson DH (2018) Dynamics of the human gut phageome during antibiotic treatment. Comput Biol Chem 74, 420-427. PubMed
  • Simmert S, Abdosamadi MK, Hermsdorf G & Schaffer E (2018) LED-based interference-reflection microscopy combined with optical tweezers for quantitative three-dimensional microtubule imaging. Opt Express 26, 14499-14513. PubMed
  • Wang ZJ, Hanet A, Weishaupl D, Martins IM, Sowa AS, Riess O & Schmidt T (2018) Divalproex sodium modulates nuclear localization of ataxin-3 and prevents cellular toxicity caused by expanded ataxin-3. CNS Neurosci Ther 24, 404-411. PubMed
  • Huson DH, Albrecht B, Bagci C, Bessarab I, Gorska A, Jolic D & Williams RBH (2018) MEGAN-LR: new algorithms allow accurate binning and easy interactive exploration of metagenomic long reads and contigs. Biol Direct 13, 6. PubMed
  • Blassle A, Soh G, Braun T, Morsdorf D, Preiss H, Jordan BM & Muller P (2018) Quantitative diffusion measurements using the open-source software PyFRAP. Nat Commun 9, 1582. PubMed
  • Ugarte-Uribe B, Prevost C, Das KK, Bassereau P & Garcia-Saez AJ (2018) Drp1 polymerization stabilizes curved tubular membranes similar to those of constricted mitochondria. J Cell Sci 132. PubMed
  • Lazzarano S, Kucka M, Castro JPL, Naumann R, Medina P, Fletcher MNC, Wombacher R, Gribnau J, Hochepied T, Van Montagu M, et al. (2018) Genetic mapping of species differences via in vitro crosses in mouse embryonic stem cells. Proc Natl Acad Sci U S A 115, 3680-3685. PubMed
  • Hantusch A, Das KK, Garcia-Saez AJ, Brunner T & Rehm M (2018) Bax retrotranslocation potentiates Bcl-xL's antiapoptotic activity and is essential for switch-like transitions between MOMP competency and resistance. Cell Death Dis 9, 430. PubMed
  • Beati H, Peek I, Hordowska P, Honemann-Capito M, Glashauser J, Renschler FA, Kakanj P, Ramrath A, Leptin M, Luschnig S, et al. (2018) The adherens junction-associated LIM domain protein Smallish regulates epithelial morphogenesis. J Cell Biol 217, 1079-1095. PubMed
  • Sgromo A, Raisch T, Backhaus C, Keskeny C, Alva V, Weichenrieder O & Izaurralde E (2018) Drosophila Bag-of-marbles directly interacts with the CAF40 subunit of the CCR4-NOT complex to elicit repression of mRNA targets. RNA 24, 381-395. PubMed
  • Bohler P, Stuhldreier F, Anand R, Kondadi AK, Schlutermann D, Berleth N, Deitersen J, Wallot-Hieke N, Wu W, Frank M, et al. (2018) The mycotoxin phomoxanthone A disturbs the form and function of the inner mitochondrial membrane. Cell Death Dis 9, 286. PubMed
  • Renschler FA, Bruekner SR, Salomon PL, Mukherjee A, Kullmann L, Schutz-Stoffregen MC, Henzler C, Pawson T, Krahn MP & Wiesner S (2018) Structural basis for the interaction between the cell polarity proteins Par3 and Par6. Sci Signal 11. PubMed
  • Bakula D, Mueller AJ & Proikas-Cezanne T (2018) WIPI beta-propellers function as scaffolds for STK11/LKB1-AMPK and AMPK-related kinase signaling in autophagy. Autophagy 14, 1082-1083. PubMed
  • Pena-Blanco A & Garcia-Saez AJ (2018) Bax, Bak and beyond - mitochondrial performance in apoptosis. FEBS J 285, 416-431. PubMed

 

 

Student publications 2017

Student publications 2016

Student publications 2015

Student publications 2014

Student publications 2013

Student publications 2012